Maria João Ramos

Computational Biochemistry, University of Porto


Selected Publications


Below is a selection of my publications, listed by date and updated on the 31/December/2019.

2019-2020|  2017-2018| 2015-2016| 2013-2014| 2011-2012| 2009-2010| 2007-2008| 2005-2006| 2003-2004| 2000-2002|
 
Publications 2003-2004

Brito, NT; Ramos, MJ

On-line classroom, a way of collecting information about students' skills

PROCEEDINGS OF INTERNATIONAL CONFERENCE ON EDUCATION AND INFORMATION SYSTEMS: TECHNOLOGY AND APPLICATIONS, 1: 79-82 2004

 

Cerqueira, NMFSA; Femandes, PA; Eriksson, LA; Ramos, MJ

New insights into a critical biological control step of the mechanism of Ribonucleotide reductase

JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 709 (1-3): 53-65 NOV 8 2004

 

Sharma, RK; Otsuka, M; Pande, V; Inoue, J; Ramos, MJ

Evans Blue is an inhibitor of nuclear factor-kappa B (NF-kappa B)-DNA binding

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 14 (24): 6123-6127 DEC 20 2004

 

Cerqueira, NMFSA; Fernandes, PA; Eriksson, LA; Ramos, MJ

Ribonucleotide activation by enzyme ribonucleotide reductase: Understanding the role of the enzyme

JOURNAL OF COMPUTATIONAL CHEMISTRY, 25 (16): 2031-2037 DEC 2004

 

Fernandes, PA; Cruz, AIS; Maia, ARR; Almeida, AAS; da Silva, AMN; Silva, BFB; Ribeiro, CMS; Ribeiro, CFB; Cunha, EMS; Maia, FRNC; Tedim, JAC; Ferreira, JAAD; Gomes, LC; Matos, LRC; Cruz, LMNFS; Pinto, MABP; da Encarnacao, MAR; Teixeira, PFRD; Seixas, RSGR; da Quinta, RJAL; Gomes, SS; Patricio, SG; Martins, SDS; Barros, TF; Selao, TSJT; Pande, V; Ramos, MJ

Design of 2-cyclopentenone derivatives with enhanced NF-kappa B: DNA binding inhibitory properties

JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 685 (1-3): 73-82 OCT 11 2004

 

Henriques, ES; Fonseca, N; Ramos, MJ

On the modeling of snake venom serine proteinase interactions with benzamidine-based thrombin inhibitors

PROTEIN SCIENCE, 13 (9): 2355-2369 SEP 2004

 

Pereira, S; Fernandes, PA; Ramos, MJ

Mechanism for ribonucleotide reductase inactivation by the anticancer drug gemcitabine

JOURNAL OF COMPUTATIONAL CHEMISTRY, 25 (10): 1286-1294 JUL 30 2004

 

Portela, C; Afonso, CMM; Pinta, MMM; Ramos, MJ

Definition of an electronic profile of compounds with inhibitory activity against hematin aggregation in malaria parasite

BIOORGANIC & MEDICINAL CHEMISTRY, 12 (12): 3313-3321 JUN 15 2004

 

Fernandes, PA; Ramos, MJ

Theoretical insights into the mechanism for thiol/disulfide exchange

CHEMISTRY-A EUROPEAN JOURNAL, 10 (1): 257-266 JAN 5 2004

 

Pereira, S; Fernandes, PA; Ramos, MJ

Theoretical study of ribonucleotide reductase mechanism-based inhibition by 2 '-azido-2 '-deoxyribonucleoside 5-diphosphates

JOURNAL OF COMPUTATIONAL CHEMISTRY, 25 (2): 227-237 JAN 30 2004

 

Ramos, MJ; Fernandes, PA; Melo, A

Modeling chemical and biological systems: A successful course for undergraduate students

JOURNAL OF CHEMICAL EDUCATION, 81 (1): 72-75 JAN 2004

2003

 

Fernandes, PA; Ramos, MJ

Theoretical studies on the mode of inhibition of ribonucleotide reductase by 2 '-substituted substrate analogues

CHEMISTRY-A EUROPEAN JOURNAL, 9 (23): 5916-5925 DEC 5 2003

 

Silva, PJ; Fernandes, PA; Ramos, MJ

A theoretical study of radical-only and combined radical/carbocationic mechanisms of arachidonic acid cyclooxygenation by prostaglandin H synthase

THEORETICAL CHEMISTRY ACCOUNTS, 110 (5): 345-351 DEC 2003

 

Portela, C; Afonso, CMM; Pinto, MMM; Ramos, MJ

Computational studies of new potential antimalarial compounds - Stereoelectronic complementarity with the receptor

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 17 (9): 583-595 SEP 2003

 

Da Fonseca, R; Menziani, MC; Melo, A; Ramos, MJ

Modelling the metabolic action of human and rat CYP1A2 and its relationship with the carcinogenicity of heterocyclic amines

MOLECULAR PHYSICS, 101 (17): 2731-2741 SEP 10 2003

 

Fernandes, PA; Carvalho, ATP; Marques, AT; Pereira, ALF; Madeira, APS; Ribeiro, ASP; Carvalho, AFR; Ricardo, ETA; Pinto, FJV; Santos, HA; Mangericao, HDG; Martins, HM; Pinto, HDB; Santos, HRR; Moreira, IS; Azeredo, MJV; Abreu, RPS; Oliveira, RMS; Sousa, SFM; Silva, RJAM; Mourao, ZS; Ramos, MJ

New designs for MRI contrast agents

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 17 (7): 463-473 JUL 2003

 

Henriques, ES; Bastos, M; Geraldes, CFGC; Ramos, MJ

Studies of inclusion complexes between cyclodextrins and polyazamacrocyclic chelates of lanthanide(III) ions

JOURNAL OF CHEMICAL THERMODYNAMICS, 35 (10): 1717-1735 OCT 2003

 

Henriques, ES; Geraldes, CFGC; Ramos, MJ

Modelling studies in aqueous solution of lanthanide (III) chelates designed for nuclear magnetic resonance biomedical applications

MOLECULAR PHYSICS, 101 (15): 2319-2333 AUG 10 2003

 

Pande, V; Ramos, MJ

Nuclear Factor Kappa B: A potential target for anti-HIV chemotherapy

CURRENT MEDICINAL CHEMISTRY, 10 (16): 1603-1615 AUG 2003

 

Portela, C; Afonso, CMM; Pinto, MMM; Ramos, MJ

Receptor-drug association studies in the inhibition of the hematin aggregation process of malaria

FEBS LETTERS, 547 (1-3): 217-222 JUL 17 2003

 

Lucas, MD; Fernandes, PA; Eriksson, LA; Ramos, MJ

Pyruvate formate lyase: A new perspective

JOURNAL OF PHYSICAL CHEMISTRY B, 107 (24): 5751-5757 JUN 19 2003

 

Fernandes, PA; Ramos, MJ

Theoretical studies on the mechanism of inhibition of ribonucleotide reductase by (E)-2 '-fluoromethylene-2 '-deoxycitidine-5 '-diphosphate

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 125 (20): 6311-6322 MAY 21 2003

 

Pande, V; Sharma, RK; Inoue, JI; Otsuka, M; Ramos, MJ

A molecular modeling study of inhibitors of nuclear factor kappa-B (p50) - DNA binding

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 17 (12): 825-836 DEC 2003

 

Preto, MAC; Melo, A; Costa, SPG; Maia, HLS; Ramos, MJ

Parametrization of synthetic amino acids

JOURNAL OF PHYSICAL CHEMISTRY B, 107 (51): 14556-14562 DEC 25 2003