PortoBioComp

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List of Software currently available on the PortoBioComp Database:

VsLab - VMD plug-in

vsLab (Virtual Screening LABoratory) is an easy-to-use graphical interface for the well known molecular docking software AutoGrid/AutoDock that has been included into VMD as a plug-in. This program allows almost anyone to use AutoDock and AutoGrid for simple docking or for virtual screening campaigns without requiring any deep knowledge about these techniques.

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compASM - VMD plug-in

CompASM is an intuitive VMD plug-in for that allows the user to perform a full Alanine Scanning Mutagenesis (ASM) procedure, requiring only very little user effort.

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MADAMM

MADAMM that to include a certain degree of flexibilization of both the receptor and the ligand during a Multi stAged Docking with an Automated Molecular Modeling protocol. The software uses standard docking software and molecular mechanics force fields in the core process and a set of scripts that automates the process without the intervention of the user.