Cheminformatics and Materials

Research Publications

Total publications: 600

593. ABINITIO COPPER WATER INTERACTION POTENTIAL FOR THE SIMULATION OF AQUEOUS-SOLUTIONS
CORDEIRO, MNDS; GOMES, JANF
in JOURNAL OF COMPUTATIONAL CHEMISTRY, 1993, ISSN: 0192-8651,  Volume: 14, 
Article,  Indexed in: scopus, wos 
A new ab initio effective two-body potential that aims at mimicking the average copper-water interaction energy of the first solvation shell was developed. This new potential, together with the MCY water-water potential and a three-body ion-water-water induction potential, is tested in simulations of gas-phase clusters [Cu2+-(H2O)20] and diluted solutions [Cu2+-(H2O)200] at T = 298 K. The results of simulations with conventional ab initio pair potentials, with and without three-body induction corrections, are also presented. The different types of copper-water interaction potentials are evaluated comparatively and the efficiency of the newly proposed effective pair potential is discussed.
594. SIMULATION OF WATER SOLUTIONS OF NI2+ AT INFINITE DILUTION
CORDEIRO, MNDS; IGNACZAK, A; GOMES, JANF
in CHEMICAL PHYSICS, 1993, ISSN: 0301-0104,  Volume: 176, 
Article,  Indexed in: scopus, wos 
A new ab initio pair potential is developed to describe the nickel-water interactions in Ni(II) aqueous solutions. Results of Monte Carlo simulations for the Ni(II)-(H2O)200 system are presented for this pair potential with and without three-body classical polarization terms (the water-water interaction is described by the ab initio MCY potential). The structure of the solution around Ni(II) is discussed in terms of radial distribution functions, coordination numbers and thermal ellipsoids. The results show that the three-body terms have a non-negligible effect on the simulated solution. In fact, the experimental coordination number of six is reproduced with the full potential while a higher value is predicted when the simple pairwise-additive potential is used. The equilibrium NiO distance for the first hydration shell is also dependent on the use of the three-body terms. Comparison of our distribution functions with those obtained by neutron-diffraction experiments shows a reasonable quantitative agreement. Statistical pattern recognition analysis has also been applied to our simulations in order to better understand the local thermal motion of the water molecules around the metal ion. In this way, thermal ellipsoids have been computed (and graphically displayed) for each atom of the water molecules belonging to the Ni(II) first hydration shell. This analysis revealed that the twisting and bending motions are greater than the radial motion, and that the hydrogens have a higher mobility than the oxygens. In addition, a thermodynamic perturbation method has been incorporated in our Monte Carlo procedure in order to compute the free energy of hydration for the Ni(II) ion. Agreement between these results and the experimental ones is also sufficiently reasonable to demonstrate the feasibility of this new potential for the nickel-water interactions.
595. Simulation of water solutions of Ni2+ at infinite dilution
Natália, M; Cordeiro, D; Ignaczak, A; Gomes, JA
in Chemical Physics, 1993, ISSN: 0301-0104,  Volume: 176, 
Article,  Indexed in: crossref 
596. Theoretical study of ionization potentials in monosubstituted benzenes
Melo, A; Gomes, JANF
in International Journal of Quantum Chemistry, 1993, ISSN: 0020-7608,  Volume: 46, 
Article,  Indexed in: crossref, scopus 
Monosubstituted benzenes, in which the substituents participate in the π‐electron system, are studied following a classification in two classes according to the π‐electronic structure of the substituent. For this type of molecule, a relation is established between the nature of the substituent and, on the one hand, the energies of the two highest occupied molecular orbitals and, on the other hand, their respective differences. The two orbitals referred to above have π‐character and belong to the a2 and b1 species if a C2v point group is assumed. Simple symmetry arguments lead to the conclusion that the a2 orbitals have, essentially, an intraring character, whereas the π‐orbitals of the substituents do give an important contribution to the b1 orbitals. Therefore, an a2 electron must have a larger interaction with the benzene ring and a smaller kinetic energy, whereas a b1 electron must have a larger interaction with the substituent and a larger kinetic energy. It is also expected that the changes in the π‐electronic structure of the substituent must much more influence the variations on the b1 energies and on the components of orbital energies associated with the substituent than the variations on the a2 energies and on the intraring components of the orbital energies. A modified version of the MOPAC program was prepared to perform the decomposition of the orbital energies in their kinetic and potential energy components and these in their monocentric and bicentric terms. MNDO calculations on nine monosubstituted benzenes, using the modified MOPAC program, give good confirmation of the symmetry predictions and prove the consistency of the classification of the substituents that is introduced. © 1993 John Wiley & Sons, Inc. Copyright © 1993 John Wiley & Sons, Inc.
597. ANALYSIS OF THE INTERACTION ENERGY IN THE CU+-H2O AND CL--H2O SYSTEMS, WITH CP CORRECTIONS TO THE BSSE OF THE SEPARATE TERMS, AND MC SIMULATIONS OF THE AQUEOUS SYSTEMS WITH AND WITHOUT CP CORRECTIONS
Natalia, M; Cordeiro, DS; Cammi, R; Gomes, JANF; Tomasi, J
in THEORETICA CHIMICA ACTA, 1992, ISSN: 0040-5744,  Volume: 82, 
Article,  Indexed in: crossref, scopus, wos 
The interaction energy DELTA-E of the systems Cu+-H2O and Cl--H2O has been computed over a wide range of distances and orientations with the MINI-1 basis set in the SCF approximation. The interaction energy has been decomposed according to the Kitaura-Morokuma scheme, with and without counterpoise (CP) corrections to the basis set superposition error. The importance of this correction is analysed by its effect upon Monte Carlo calculations of the Cu+-water and Cl--water systems, using two-body potentials without and with CP corrections. The effect of CP corrections on the DELTA-E analysis is similar to that found in other systems of analogous composition (of the general type ion plus neutral ligands), but with significant differences in the details. The effect of the CP corrections to the interaction potential, and then on the results of the Monte Carlo simulations, is small for the Cu+ ion, but remarkable for the Cl- ion.
598. THE STRUCTURE OF MOLTEN CSAU - ABINITIO AND MONTE-CARLO STUDY
Cabral, BJC; Natalia, M; Cordeiro, DS; Da Gama, MMT
in JOURNAL OF PHYSICS-CONDENSED MATTER, 1991, ISSN: 0953-8984,  Volume: 3, 
Article,  Indexed in: crossref, scopus, wos 
We report the results of a Monte Carlo simulation for the structure of the stoichiometric CsAu melt, based on an ab initio quantum mechanical calculation of the interionic potentials, which is in excellent agreement with experiment,
599. THE ROLE OF MANY-BODY INTERACTIONS IN THE STABILITY OF HYDRATED CU-2+ CLUSTERS
CORDEIRO, MNDS; GOMES, JANF; GONZALEZLAFONT, A; LLUCH, JM; BERTRAN, J
in CHEMICAL PHYSICS, 1990, ISSN: 0301-0104,  Volume: 141, 
Article,  Indexed in: crossref, scopus, wos 
The effects of three-body and, in a few cases, four-body and higher-order terms were studied for several Cu2+-(H2O)n (n up to 8) clusters proposed as models of the first hydration shell of the Cu2+ ion. This is based on ab initio SCF calculations performed for the n=6 cluster and for all the required tetramer, trimer and dimer subunits of this cluster and of the n = 8 cluster. The computed many-body results show that the three-body terms are non-negligible and lead to strong repulsive contributions to the total pairwise additive interaction energy of the Cu2+-(H2O)n systems. Pronounced changes on the hydration number (n) and on the optimal CuO distances (r) of this ion's first shell are obtained when two-body terms (n = 8, r = 2.09 Å)alone are considered or three-body terms (n = 6, r = 2.15 Å) are included. The four-body terms are found to be quite small in comparison with the three-body terms. The remaining higher-order terms are shown to be even much smaller than the four-body terms, thus indicating a rapid convergence of the many-body expansion of the interaction energy for this hydrated ion. This work suggests that, when a simple model is required for the interaction potential of metal ions with water, as it is the case in Monte Carlo or molecular dynamics simulations, a good degree of accuracy depends on supplementing the usual pairwise additive type of potential by three-body terms, and modelling of these depends on detailed studies of the type presented here. © 1990.
600. THE CU+-H2O INTERACTION POTENTIAL AND ITS APPLICATION TO THE STUDY OF [CU(H2O)N]+ CLUSTERS AT DIFFERENT TEMPERATURES
CORDEIRO, MNDS; GOMES, JANF; GONZALEZLAFONT, A; LLUCH, JM; OLIVA, A; BERTRAN, J
in JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS II, 1988, ISSN: 0300-9238,  Volume: 84, 
Article,  Indexed in: wos