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software: 8 Hits

asy-to-use graphical interface for the well known molecular docking software AutoGrid/AutoDock that has been ... d during a Multi stAged Docking with an Automated Molecular Modeling protocol. The results obtained with thi... a]] ### VolArea is a plug-in of the widely spread molecular graphics software Visual Molecular Dynamics (VMD)... ng any prior knowledge of the user in the area of molecular visualization or even molecular modeling. This me

madamm: 7 Hits

//MADAMM: a multistaged docking with an automated molecular modeling protocol.//\\ N. M. F. S. A. Cerqueira, ... d during a Multi stAged Docking with an Automated Molecular Modeling protocol. Generally speaking the software uses standard docking software and molecular mechanics force fields in the core process and a set ... == In order to run the vsÇab plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can

vmdmagazine: 5 Hits

ng any prior knowledge of the user in the area of molecular visualization or even molecular modeling. This m... dents) do not have to worry about the handling of molecular visualization software or in the preparation of s... o run the **//VMDMagazine//** plug-in, the Visual Molecular dynamics software (VMD) must be installed. The installation of NAMD ( molecular dynamic simulation program) is __optional__. VMD can be found at htt

compasm: 4 Hits

otein-protein interactions play a crucial role in molecular recognition and cellular function. Mapping them, ... r two widely distributed softwares ( AMBER-Visual Molecular Dynamics (VMD)) that allows the user to perform a... ns the main procedures of the ASM algorithm, e.g. Molecular Dynamics Simulation and MMPBSA calculation. It ca... er to run the **//compASM//** plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can

volarea: 3 Hits

=== ### VolArea is a plug-in of the widely spread molecular graphics software Visual Molecular Dynamics (VMD)... er to run the **//volArea//** plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can

vslab: 3 Hits

qua.22738]]\\ ---- ===== 1. Introduction ===== Molecular docking is becoming an important part in the proc... asy-to-use graphical interface for the well known molecular docking software AutoGrid/AutoDock that has been ... == In order to run the vsÇab plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can

sidebar: 2 Hits

Research Data === * [[Benchmarks]]\\ * [[molecular_mechanics | Molecular Mechanics Parameters]]\\

selection_manager: 2 Hits

== ### VMD is an exceptional program to visualize molecular structures. The main drawback of this software is... to run the"Selection Manager" plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can

selector_manager: 2 Hits

== ### VMD is an exceptional program to visualize molecular structures. The main drawback of this software is... to run the"Selector Manager" plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can

chem-path-tracker: 2 Hits

r the distances of a large pathway, even during a molecular dynamics simulation. ### ===== 2. ScreenShots ===... to run the Chem-Path-Tracker plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can

biopathfinder: 2 Hits

r the distances of a large pathway, even during a molecular dynamics simulation. ### ===== 2. ScreenShots ===... rder to run the BioPathFinder plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can

mm:parameters:manganese:hhdh_ho: 1 Hits

cs.org/doi/abs/10.1021/ct400055v | Parameters for Molecular Dynamics Simulations of Manganese-Containing Meta

frontpage: 1 Hits

chmarks|An interwiki link @ 2,0,124,145]] * [[molecular_mechanics|An interwiki link @ 163,0,308,144]] *

mm:parameters:manganese:ddwawawawa: 1 Hits

cs.org/doi/abs/10.1021/ct400055v | Parameters for Molecular Dynamics Simulations of Manganese-Containing Meta

mm:parameters:manganese:ded_cl: 1 Hits

mm:parameters:manganese:dedwawawa: 1 Hits

mm:parameters:manganese:dee_so2: 1 Hits

mm:parameters:manganese:denwawawa: 1 Hits

mm:parameters:manganese:hdewawawa: 1 Hits

mm:parameters:manganese:ed_py2_wawa: 1 Hits

mm:parameters:manganese:hhewawa: 1 Hits

mm:parameters:manganese:hhdh_ho_o: 1 Hits

mm:parameters:manganese:hhdhwa: 1 Hits

mm:parameters:manganese:hhe_d2: 1 Hits

benchmarks: 1 Hits

mm:parameters:copper_zinc:hhh_cu_h_zn_dhh: 1 Hits

vmdmagazinedatabase: 1 Hits

mm:parameters:iron:cc_c_2: 1 Hits

mm:parameters:iron:cc_fe_ss_fe_cc: 1 Hits

molecular_mechanics: 1 Hits

mm:parameters:iron:cccc: 1 Hits