compasm
Differences
This shows you the differences between two versions of the page.
|
compasm [2013/10/02 16:45] nuno [4. Installation] |
compasm [2013/10/03 09:53] (current) nuno [2. ScreenShots] |
||
|---|---|---|---|
| Line 19: | Line 19: | ||
| //CompASM: an Amber-VMD alanine scanning mutagenesis plug-in.//\\ | //CompASM: an Amber-VMD alanine scanning mutagenesis plug-in.//\\ | ||
| J. Ribeiro, N. M. F. S. A. Cerqueira, I. S. Moreira, P. A. Fernandes AND M. J. Ramos \\ | J. Ribeiro, N. M. F. S. A. Cerqueira, I. S. Moreira, P. A. Fernandes AND M. J. Ramos \\ | ||
| - | Theoretical Chemistry Accounts, 2012, 131:1271 | + | Theoretical Chemistry Accounts, 2012, 131:1271\\ |
| [[http://link.springer.com/article/10.1007%2Fs00214-012-1271-2|10.1007/s00214-012-1271-2]]\\ | [[http://link.springer.com/article/10.1007%2Fs00214-012-1271-2|10.1007/s00214-012-1271-2]]\\ | ||
| Line 40: | Line 40: | ||
| ===== 2. ScreenShots ===== | ===== 2. ScreenShots ===== | ||
| - | {{gallery>software:compasm:screenshots?*&150x150&lightbox}} | + | {{gallery>software::compasm?*&150x150&lightbox}} |
| ===== 3. Download ===== | ===== 3. Download ===== | ||
| - | In order to run the **//volArea//** plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can be found at http://www.ks.uiuc.edu/Research/vmd/ . | + | In order to run the **//compASM//** plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can be found at http://www.ks.uiuc.edu/Research/vmd/ . |
| <note tip> | <note tip> | ||
| - | * VolArea Plug-in : **v1.0** {{:download-big.png?direct&100|}} | + | * compASM Plug-in : **v1.0** {{:download-big.png?direct&100|}} |
| Line 61: | Line 61: | ||
| | | ||
| - | Unix OS- Open a shell window and type: | + | Unix OS- Open a shell window and type: |
| cd | cd | ||
| cd Desktop/CompASM | cd Desktop/CompASM | ||
| Line 67: | Line 67: | ||
| | | ||
| - | Windows- Double-click on the install.tcl file | + | Windows- Double-click on the install.tcl file |
| - | * Follow the instructions given in the window | + | - Follow the instructions given in the window |
| - | * Start VMD. | + | - Start VMD. |
| - | * Edit amber_run.sh file to a proper sander launch (file containing the command to launch sander tool) | + | - Edit amber_run.sh file to a proper sander launch (file containing the command to launch sander tool) |
compasm.1380728718.txt.gz · Last modified: 2013/10/02 16:45 by nuno
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 3.0 Unported
