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vmdmagazinedatabase [2014/05/02 11:57] nuno [Alkaloids] |
vmdmagazinedatabase [2017/06/30 11:58] (current) nuno [Transition States] |
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- | //**Version:**// (2013/10/01) {{:software:vmdmagazine:enzymes:download:enzymes.zip|Version 1.0}} | + | //**Version:**// (2013/10/01) {{:software:vmdmagazine:download:enzymes.zip| Version 1.1}} |
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- | //**Version:**// (2013/10/01) {{:software:vmdmagazine:intforces:download:chemical_bonds.zip|Version 1.0}} | + | //**Version:**// (2013/10/01) {{:software:vmdmagazine:download:chemical_bonds.zip| Version 1.1}} |
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- | //**Version:**// (2013/10/01) {{:software:vmdmagazine:active_site_tunnel:download:active_site_tunnel.zip| Version 1.0}} | + | //**Version:**// (2013/10/01) {{:software:vmdmagazine:download:active_site_tunnel.zip| Version 1.1}} |
//**Languages: **// en, pt | //**Languages: **// en, pt | ||
+ | ---- | ||
+ | |||
+ | ====== pH indicators Molecules ====== | ||
+ | ### | ||
+ | A pH indicator is a halochromic chemical compound added in small amounts to a solution so the pH (acidity or basicity) of the solution can be determined visually | ||
+ | ### | ||
+ | ### | ||
+ | In this package are illustrated some molecules that behave as pH indicators. | ||
+ | ### | ||
+ | //**Screenshots**// | ||
+ | |||
+ | {{gallery>:software:vmdmagazine:phindicator?*&150x150&lightbox}} | ||
+ | |||
+ | //**Version:**// (2017/04/2) {{::software:vmdmagazine:download:ph_indicators.zip| Version 1.1}} | ||
+ | |||
+ | //**Languages: **// en | ||
+ | ---- | ||
+ | ====== Dyes ====== | ||
+ | ### | ||
+ | A dye is a colored substance that has an affinity to the substrate to which it is being applied. | ||
+ | ### | ||
+ | ### | ||
+ | In this package are illustrated some molecules that behave as dyes. | ||
+ | ### | ||
+ | //**Screenshots**// | ||
+ | {{gallery>:software:vmdmagazine:dyes?*&150x150&lightbox}} | ||
+ | |||
+ | |||
+ | //**Version:**// (2017/06/20) {{::software:vmdmagazine:download:dyes.zip|Version 1.1}} | ||
+ | |||
+ | //**Languages: **// en | ||
+ | ---- | ||
+ | ====== Protein Structure ====== | ||
+ | ### | ||
+ | Protein structure is the three-dimensional arrangement of atoms in a protein molecule. Proteins are polymers formed from sequences of amino acids, the monomers of the polymer. | ||
+ | The term structure when used in relation to proteins, takes on a much more complex meaning than it does for small molecules. Proteins are macromolecules and have four different levels of structure – primary, secondary, tertiary and quaternary. | ||
+ | |||
+ | ### | ||
+ | ### | ||
+ | In this package are illustrated some examples of the specific structures of proteins. | ||
+ | |||
+ | ### | ||
+ | //**Screenshots**// | ||
+ | {{gallery>:software:vmdmagazine:proteinstructure?*&150x150&lightbox}} | ||
+ | |||
+ | //**Version:**// (2016/12/20) {{::software:vmdmagazine:download:protein_structure.zip|Version 1.1}} | ||
+ | |||
+ | //**Languages: **// en | ||
+ | ---- | ||
+ | |||
+ | ====== Pharmaceutical Drugs ====== | ||
+ | ### | ||
+ | A pharmaceutical drug (also referred to as medicine, medication, or simply as drug) is a drug used to diagnose, cure, treat, or prevent disease. | ||
+ | |||
+ | ### | ||
+ | ### | ||
+ | In this package are illustrated some examples of molecules that are commercially available and are used clinically to create diseases. | ||
+ | |||
+ | ### | ||
+ | //**Screenshots**// | ||
+ | {{gallery>:software:vmdmagazine:pdrugs?*&150x150&lightbox}} | ||
+ | |||
+ | |||
+ | //**Version:**// (2017/03/2) {{::software:vmdmagazine:download:drugs.zip|Version 1.1}} | ||
+ | |||
+ | //**Languages: **// en | ||
+ | ---- | ||
+ | |||
+ | ====== Transition States ====== | ||
+ | ### | ||
+ | The transition state of a chemical reaction is a particular configuration along the reaction coordinate. It is defined as the state corresponding to the highest potential energy along this reaction coordinate. | ||
+ | |||
+ | ### | ||
+ | ### | ||
+ | In this package are illustrated some examples of transition states that were obtained from computational means. | ||
+ | |||
+ | ### | ||
+ | //**Screenshots**// | ||
+ | {{gallery>:software:vmdmagazine:ts?*&150x150&lightbox}} | ||
+ | |||
+ | |||
+ | //**Version:**// (2017/06/30) {{::software:vmdmagazine:download:transition_states.zip|Version 1.1}} | ||
+ | |||
+ | //**Languages: **// en | ||
---- | ---- |