software
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software [2013/10/02 17:18] nuno |
software [2017/06/30 11:26] (current) nuno |
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| + | ~~NOTOC~~ | ||
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| + | {{:folder-software.png?direct|}} | ||
| + | </WRAP> | ||
| + | \\ | ||
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| List of Software currently available on the PortoBioComp Database: | List of Software currently available on the PortoBioComp Database: | ||
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| - | [[compasm|{{:software:madamm:madamm1.png?direct&200|}}]] | + | [[madamm|{{:software:madamm:madamm1.png?direct&200|}}]] |
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| - | [[biopathfinder|bioPathFinder]] | + | [[Chem-path-tracker|Chem-path-tracker]] |
| + | ### | ||
| + | Chem-path-tracker is a VMD plug-in that allows the user to highlight and reveal potential chemical motifs requiring only a few selections. The analysis is based on atoms/residues pair distances applying a modified version of Dijkstra’s algorithm, and it makes possible to monitor the distances of a large pathway, even during a molecular dynamics simulation. | ||
| + | ### | ||
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| + | ---- | ||
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| + | <WRAP column 15%> | ||
| + | [[biopathfinder|{{:molup_00003.png?direct&200|}}]] | ||
| + | </WRAP> | ||
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| + | [[molUP|molUP]] | ||
| ### | ### | ||
| - | BioPathFinder is a VMD plug-in that allows the user to highlight and reveal potential chemical motifs requiring only a few selections. The analysis is based on atoms/residues pair distances applying a modified version of Dijkstra’s algorithm, and it makes possible to monitor the distances of a large pathway, even during a molecular dynamics simulation. | + | molUP is a VMD extension that provides a simple manner for loading and saving Gaussian files, and analyze related results. molUP provides a graphical interface for VMD where the users can load and save chemical structures in the Gaussian file formats. |
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software.1380730725.txt.gz · Last modified: 2013/10/02 17:18 by nuno
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