This shows you the differences between two versions of the page.
compasm [2013/10/02 16:44] nuno |
compasm [2013/10/03 09:53] (current) nuno [2. ScreenShots] |
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//CompASM: an Amber-VMD alanine scanning mutagenesis plug-in.//\\ | //CompASM: an Amber-VMD alanine scanning mutagenesis plug-in.//\\ | ||
J. Ribeiro, N. M. F. S. A. Cerqueira, I. S. Moreira, P. A. Fernandes AND M. J. Ramos \\ | J. Ribeiro, N. M. F. S. A. Cerqueira, I. S. Moreira, P. A. Fernandes AND M. J. Ramos \\ | ||
- | Theoretical Chemistry Accounts, 2012, 131:1271 | + | Theoretical Chemistry Accounts, 2012, 131:1271\\ |
[[http://link.springer.com/article/10.1007%2Fs00214-012-1271-2|10.1007/s00214-012-1271-2]]\\ | [[http://link.springer.com/article/10.1007%2Fs00214-012-1271-2|10.1007/s00214-012-1271-2]]\\ | ||
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===== 2. ScreenShots ===== | ===== 2. ScreenShots ===== | ||
- | {{gallery>software:compasm:screenshots?*&150x150&lightbox}} | + | {{gallery>software::compasm?*&150x150&lightbox}} |
===== 3. Download ===== | ===== 3. Download ===== | ||
- | In order to run the **//volArea//** plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can be found at http://www.ks.uiuc.edu/Research/vmd/ . | + | In order to run the **//compASM//** plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can be found at http://www.ks.uiuc.edu/Research/vmd/ . |
<note tip> | <note tip> | ||
- | * VolArea Plug-in : **v1.0** {{:download-big.png?direct&100|}} | + | * compASM Plug-in : **v1.0** {{:download-big.png?direct&100|}} |
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- | (Unix)- Open a shell window and type: | + | Unix OS- Open a shell window and type: |
cd | cd | ||
cd Desktop/CompASM | cd Desktop/CompASM | ||
tclsh8.5 install.tcl | tclsh8.5 install.tcl | ||
| | ||
- | (Windows)- Double-click on the install.tcl file | ||
+ | Windows- Double-click on the install.tcl file | ||
- | * Follow the instructions given in the window | + | |
- | * Start VMD. | + | - Follow the instructions given in the window |
- | * Edit amber_run.sh file to a proper sander launch (file containing the command to launch sander tool) | + | - Start VMD. |
+ | - Edit amber_run.sh file to a proper sander launch (file containing the command to launch sander tool) |