PortoBioComp

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====== CompASM ======


//Operating systems: Windows, MacOS and Linux.//

{{:b-download.png?direct&100|}} [[vmdmagazinedatabase|{{:b-database.png?direct&100|}}]]

Contacts : [[jrvribeiro@gmail.com|João Ribeiro]] [[nscerque@fc.up.pt|Nuno Sousa Cerqueira]] [[pafernan@fc.up.pt|Pedro A. Fernandes]]  [[mjramos@fc.up.pt|Maria João Ramos]]


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{{:theoreticalchemicalaccounts.jpg?direct&100|}}
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**__Citation :__** \\

//CompASM: an Amber-VMD alanine scanning mutagenesis plug-in.//\\
J. Ribeiro, N. M. F. S. A. Cerqueira, I. S. Moreira, P. A. Fernandes AND M. J. Ramos \\
Theoretical Chemistry Accounts, 2012, 131:1271
[[http://link.springer.com/article/10.1007%2Fs00214-012-1271-2|10.1007/s00214-012-1271-2]]\\


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===== 1. Introduction =====
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===== 2. ScreenShots =====

{{gallery>software:compasm:screenshots?*&150x150&lightbox}}


===== 3. Download =====

In order to run the **//compASM//** plug-in, the Visual Molecular dynamics software (VMD) must be installed. It can be found at http://www.ks.uiuc.edu/Research/vmd/ .

<note tip>
  * compASM Plug-in  : **v1.0** {{:download-big.png?direct&100|}}


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===== 4. Installation =====
The compASM plug-in runs in any platform where VMD runs, i.e., Windows, OSX and LINUX.

  - Install the VMD software ( if you haven't yet installed).
  - Extract vmdMagazine.zip file to a directory in the disk.
  - Once unpacked, we need to let VMD know of this location. To do so, edit your VMD start-up file and add the biopathfinder plugin directory to the auto_path variable (see below).
  - Once this procedure is complete the BioPathFinder plugin can be found at the VMD extensions menu (CompBioComp>>vmdMagazine).
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